# Generated by roxygen2: do not edit by hand

export(build_module1_qc_report)
export(build_module2_qc_report)
export(build_module3_qc_report)
export(check_predicted_links)
export(craftgrn_demo_data_info)
export(download_craftgrn_demo_data)
export(export_predicted_tfbs_bed)
export(export_tf_target_bedpe)
export(load_config)
export(load_gene_tss)
export(load_omics_data)
export(load_predicted_links)
export(load_predicted_tfbs)
export(load_prep_multiomic_data)
export(module1_correlate_TF_to_canonical_tfbs)
export(module1_filter_canonical_bound_tfbs)
export(module1_predict_full_tfbs)
export(module1_prepare_tfbs_inputs)
export(module2_correlate_fp_targets)
export(module2_correlate_tf_targets)
export(module2_identify_candidate_links)
export(module2_link_fp_targets)
export(module2_output_predicted_links)
export(module3_construct_docs)
export(module3_extract_topics)
export(module3_prepare_differential_links)
export(module3_train_topic_models)
export(output_predicted_tfbs)
export(predict_tf_targets)
export(predict_tfbs)
export(query_predicted_links)
export(report_direct_tf_tf_regulations)
export(report_tf_tf_coregulations)
export(report_top_tf_targets)
export(run_app)
export(run_topic_modeling)
export(save_omics_data)
export(validate_config)
export(visualize_differential_grns)
export(visualize_topic_modeling_results)
import(data.table)
importFrom(Rcpp,evalCpp)
importFrom(graphics,abline)
importFrom(graphics,barplot)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,symbols)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(methods,as)
importFrom(stats,aggregate)
importFrom(stats,ave)
importFrom(stats,end)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(stats,start)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,modifyList)
useDynLib(craftgrn, .registration = TRUE)
