Package: bedr
Type: Package
Title: Genomic Region Processing using Tools Such as 'BEDTools',
        'BEDOPS' and 'Tabix'
Version: 1.1.3
Date: 2025-04-04
Authors@R: c(
  person("Syed", "Haider", role = "aut"),
  person("Daryl", "Waggott", role = "aut"),
  person("Emilie", "Lalonde", role = "ctb"),
  person("Clement", "Fung", role = "ctb"),
  person("Helena", "Winata", role = "ctb"),
  person("Dan", "Knight", role = "ctb"),
  person("Michael", "Chirico", role = "ctb"),
  person("Melinda", "Luo", role = "ctb"),
  person("Paul", "C. Boutros", role = c("aut", "cre", "cph"), email = "pboutros@mednet.ucla.edu")
  )
Description: Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'.
  These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging.
  bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.
Depends: R (>= 3.0)
SystemRequirements: Preferred genomic operations engine: 'BEDTools',
        'BEDOPS' and 'Tabix (>= 1.3)'.
Suggests: knitr (>= 1.4), rmarkdown (>= 0.9.5)
VignetteBuilder: knitr
License: GPL-2
URL: https://github.com/uclahs-cds/package-bedr
BugReports: https://github.com/uclahs-cds/package-bedr/issues
Imports: testthat (>= 3.0.0), VennDiagram (>= 1.6.4), data.table (>=
        1.8.11), R.utils (>= 2.0.2), yaml (>= 2.1.10), parallel, grid
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2025-04-04 22:48:11 UTC; danknight
Author: Syed Haider [aut],
  Daryl Waggott [aut],
  Emilie Lalonde [ctb],
  Clement Fung [ctb],
  Helena Winata [ctb],
  Dan Knight [ctb],
  Michael Chirico [ctb],
  Melinda Luo [ctb],
  Paul C. Boutros [aut, cre, cph]
Maintainer: Paul C. Boutros <pboutros@mednet.ucla.edu>
Repository: CRAN
Date/Publication: 2025-04-06 14:00:05 UTC
Built: R 4.4.3; ; 2025-11-12 04:36:47 UTC; windows
