Package: genBaRcode
Title: Analysis and Visualization Tools for Genetic Barcode Data
Version: 1.2.8
Authors@R: person(given = "Lars", family = "Thielecke", role = c("aut", "cre"), 
           email = "lars.thielecke@tu-dresden.de")
Description: Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).
Depends: R (>= 3.4)
License: LGPL
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Suggests: BiocManager, testthat, knitr, rmarkdown
Imports: methods, RColorBrewer, ape, ggnetwork, ggplot2, ggraph,
        igraph, network, phangorn, stringdist, visNetwork, reshape2,
        S4Vectors, shiny, ggtree, dplyr, VennDiagram, futile.logger,
        future, future.apply, tools, ShortRead, Biostrings
RoxygenNote: 7.3.1
Collate: 'BCdata-class.R' 'BCdata-class-methods.R'
        'analysis_functions.R' 'data.R' 'error_correction_function.R'
        'helper_functions.R' 'plot_functions.R' 'raw_data_processing.R'
NeedsCompilation: no
Packaged: 2025-03-10 14:08:39 UTC; thiella
Author: Lars Thielecke [aut, cre]
Maintainer: Lars Thielecke <lars.thielecke@tu-dresden.de>
Repository: CRAN
Date/Publication: 2025-03-10 15:00:02 UTC
Built: R 4.4.3; ; 2025-11-12 05:29:22 UTC; windows
