Package: ADAPTS
Type: Package
Title: Automated Deconvolution Augmentation of Profiles for Tissue
        Specific Cells
Version: 1.0.22
Author: Samuel A Danziger
Maintainer: Samuel A Danziger <sam.danziger@gmail.com>
Copyright: Bristol-Myers Squibb
Description: Tools to construct (or add to) cell-type signature matrices using flow sorted or single cell samples and deconvolve bulk gene expression data.
    Useful for assessing the quality of single cell RNAseq experiments, estimating the accuracy of signature matrices, and determining cell-type spillover. 
    Please cite: Danziger SA et al. (2019) ADAPTS: Automated Deconvolution Augmentation of Profiles for Tissue Specific cells <doi:10.1371/journal.pone.0224693>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
Depends: R (>= 3.3.0)
biocViews:
Imports: missForest, e1071, ComICS, pheatmap, doParallel, utils,
        quantmod, preprocessCore, pcaMethods, foreach, nnls, ranger
Suggests: R.rsp, DeconRNASeq, WGCNA
VignetteBuilder: R.rsp
NeedsCompilation: no
Packaged: 2022-09-14 02:37:08 UTC; sdanzige
Repository: CRAN
Date/Publication: 2022-09-14 06:50:14 UTC
Built: R 4.5.2; ; 2025-11-08 03:52:05 UTC; windows
