# Generated by roxygen2: do not edit by hand

export(CSeQTL_GS)
export(CSeQTL_dataGen)
export(CSeQTL_full_analysis)
export(CSeQTL_linearTest)
export(CSeQTL_oneExtremeSim)
export(CSeQTL_run_MatrixEQTL)
export(CSeQTL_smart)
export(OLS_sim)
export(gen_true_RHO)
export(plot_RHO)
export(prep_gene_info)
importFrom(GenomicFeatures,exonsBy)
importFrom(GenomicFeatures,makeTxDbFromGFF)
importFrom(HelpersMG,wget)
importFrom(MatrixEQTL,Matrix_eQTL_main)
importFrom(MatrixEQTL,SlicedData)
importFrom(MatrixEQTL,modelLINEAR)
importFrom(R.utils,gzip)
importFrom(Rcpp,sourceCpp)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(emdbook,rbetabinom)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,boxplot)
importFrom(graphics,hist)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(methods,is)
importFrom(multcomp,adjusted)
importFrom(multcomp,glht)
importFrom(smarter,calc_JK)
importFrom(smarter,name_change)
importFrom(smarter,smart_df)
importFrom(smarter,smart_mkdir)
importFrom(smarter,smart_names)
importFrom(smarter,smart_progress)
importFrom(smarter,smart_rmcols)
importFrom(smarter,smart_table)
importFrom(stats,cooks.distance)
importFrom(stats,lm)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,pchisq)
importFrom(stats,predict)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rbeta)
importFrom(stats,rbinom)
importFrom(stats,residuals)
importFrom(stats,rgamma)
importFrom(stats,rnbinom)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(utils,head)
importFrom(utils,str)
useDynLib(CSeQTL)
