Package: viewpoly
Title: A Shiny App to Visualize Genetic Maps and QTL Analysis in
        Polyploid Species
Version: 0.4.1
Authors@R: c(
           person(given = "Cristiane",
                  family = "Taniguti",
                  role = c("aut", "cre"),
                  email = "chtaniguti@tamu.edu"),
           person(given = "Gabriel",
                  family = "de Siqueira Gesteira",
                  role = c("aut"),
                  email = "gdesiqu@ncsu.edu"),
           person(given = "Jeekin",
                  family = "Lau",
                  role = c("aut")),
           person(given = "Olivia",
                  family = "Angelin-Bonnet",
                  role = c("aut")),
           person(given = "Susan",
                  family = "Thomson",
                  role = c("ctb")),
           person(given = "Guilherme",
                  family = "da Silva Pereira",
                  role = c("ctb")),
           person(given = "David",
                  family = "Byrne",
                  role = c("ctb")),
           person(given = "Zhao-Bang",
                  family = "Zeng",
                  role = c("ctb")),   
           person(given = "Oscar",
                  family = "Riera-Lizarazu",
                  role = c("ctb")),
           person(given = "Marcelo",
                  family = "Mollinari",
                  role = c("aut"),
                  email = "mmollin@ncsu.edu")
           )
Maintainer: Cristiane Taniguti <chtaniguti@tamu.edu>
Description: Provides a graphical user interface to integrate, visualize and explore results 
            from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid 
            species. The app is meant for interactive use and allows users to optionally upload different sources 
            of information, including  gene annotation and alignment files, enabling the exploitation and search for 
            candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 
            'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages. 
License: GPL (>= 3)
Depends: R (>= 4.0)
Imports: shiny (>= 1.6.0), shinyjs, shinythemes, shinyWidgets,
        shinydashboard, config (>= 0.3.1), golem (>= 0.3.1), JBrowseR,
        dplyr, tidyr, DT, ggplot2, ggpubr, plotly, vroom, abind,
        reshape2, markdown, stats, hidecan, purrr
URL: https://github.com/mmollina/viewpoly
BugReports: https://github.com/mmollina/viewpoly/issues
Encoding: UTF-8
RoxygenNote: 7.2.3
Suggests: testthat (>= 3.0.0), shinytest, rlang, pkgload, vdiffr
Config/testthat/edition: 3
Language: en-US
NeedsCompilation: no
Packaged: 2024-03-28 22:16:27 UTC; chtan
Author: Cristiane Taniguti [aut, cre],
  Gabriel de Siqueira Gesteira [aut],
  Jeekin Lau [aut],
  Olivia Angelin-Bonnet [aut],
  Susan Thomson [ctb],
  Guilherme da Silva Pereira [ctb],
  David Byrne [ctb],
  Zhao-Bang Zeng [ctb],
  Oscar Riera-Lizarazu [ctb],
  Marcelo Mollinari [aut]
Repository: CRAN
Date/Publication: 2024-03-28 22:30:02 UTC
Built: R 4.5.2; ; 2025-11-08 05:16:47 UTC; windows
