# Gaussian Clinically Informative Visiting and Observation Processes in Electronic Health Record (EHR) Data

## Documentation for package ‘CIMEHR’ version 0.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

available_comparison_methods | Available Methods for method_comparisons()
bootstrap | Bootstrap Confidence Intervals for Selected Model Fits
CIMEHR | Clinical Informative Missingness for Electronic Health Records (CIMEHR) - Joint Three-Stage Model
CIMEHR_timevarying_integral | Clinical Informative Missingness for Electronic Health Records (CIMEHR) with Gauss-Hermite (GH) Quadrature - Time-Varying Variant
CIMEHR_timevarying_ou | Clinical Informative Missingness for Electronic Health Records (CIMEHR) with Ornstein-Uhlenbeck (OU) Pairwise Composite Likelihood (PCL) Extension - Time-Varying Variant
coef.CIMEHR | Extract Coefficients from a Clinical Informative Missingness for Electronic Health Records (CIMEHR) Fit
coef.CIMEHR_timevarying_integral | Extract Coefficients from a Clinical Informative Missingness for Electronic Health Records (CIMEHR) Fit
coef.CIMEHR_timevarying_ou | Extract Coefficients from a Clinical Informative Missingness for Electronic Health Records (CIMEHR) Fit
coef_stage | Extract One or More Coefficients from a Fitted Method
confint.CIMEHR | Confidence Intervals for Clinical Informative Missingness for Electronic Health Records (CIMEHR) Outcome Coefficients
confint.CIMEHR_timevarying_ou | Confidence Intervals for Clinical Informative Missingness for Electronic Health Records (CIMEHR) Outcome Coefficients
EHRJoint | Joint Estimation for Electronic Health Record (EHR) Longitudinal Processes (EHRJoint)
extract_coefficient | Extract One or More Coefficients from a Fitted Method
Inverse_intensity_rate_ratio_balancing | Inverse Intensity Rate Ratio (IIRR) Estimator with Balancing Weights
Inverse_intensity_rate_ratio_weighting | Inverse Intensity Rate Ratio (IIRR) Weighting Estimator
Joint_modeling_visiting_and_longitudinal_Liang | Joint Model for Visiting and Longitudinal (JMVL) Processes with Informative Presence (IP) Adjustment (Liang's Method)
Linear_increment | Fit and Compare Multiple Methods
Linear_increment_IP | Linear Increment (LI) Imputation with Informative Presence (IP) Adjustment
Linear_mixed_model | Fit a Linear Mixed Model for Longitudinal Data
method_comparisons | Fit and Compare Multiple Methods
Multiple_imputation | Fit and Compare Multiple Methods
Multiple_imputation_IP | Multiple Imputation (MI) with Informative Presence (IP) Adjustment
Pairwise_likelihood | Pairwise Composite Likelihood (PCL) Generalized Linear Model (GLM) Estimation
print.CIMEHR | Print a Clinical Informative Missingness for Electronic Health Records (CIMEHR) Fit
print.cimehr_bootstrap | Print a Bootstrap Result
print.CIMEHR_timevarying_integral | Print a Clinical Informative Missingness for Electronic Health Records with Gauss-Hermite Quadrature (CIMEHR_timevarying_integral) Fit
print.CIMEHR_timevarying_ou | Print a Clinical Informative Missingness for Electronic Health Records with Ornstein-Uhlenbeck Pairwise Composite Likelihood (CIMEHR_timevarying_ou) Fit
print.EHRJoint | Print a Joint Estimation for Electronic Health Record (EHR) Longitudinal Processes (EHRJoint) Fit
print.Inverse_intensity_rate_ratio_balancing | Print an Inverse Intensity Rate Ratio (IIRR) Estimator with Balancing Weights Fit
print.Inverse_intensity_rate_ratio_weighting | Print an Inverse Intensity Rate Ratio (IIRR) Weighting Estimator Fit
print.Joint_modeling_visiting_and_longitudinal_Liang | Print a Joint Model for Visiting and Longitudinal (JMVL) Processes (Liang) Fit
print.Linear_increment_IP_result | Print a Linear Increment (LI) Imputation with Informative Presence (IP) Adjustment Fit
print.Linear_mixed_model_result | Print a Linear Mixed Model for Longitudinal Data Result
print.Multiple_imputation_IP_result | Print a Multiple Imputation (MI) with Informative Presence (IP) Adjustment Fit
print.Pairwise_likelihood | Print a Pairwise Composite Likelihood (PCL) Generalized Linear Model (Pairwise_likelihood) Fit
print.Summary_stat_result | Print a Summary-Statistic Regression for Longitudinal Data Result
sim_data_gen | Simulate Longitudinal Electronic Health Record (EHR) Data with Informative Visiting and Observation Processes
sim_ehr_data | Simulated Electronic Health Record (EHR) Longitudinal Data
summary.CIMEHR | Summarise a Clinical Informative Missingness for Electronic Health Records (CIMEHR) Fit
summary.cimehr_bootstrap | Summarise a Bootstrap Result
summary.CIMEHR_timevarying_integral | Summarise a Clinical Informative Missingness for Electronic Health Records with Gauss-Hermite Quadrature (CIMEHR_timevarying_integral) Fit
summary.CIMEHR_timevarying_ou | Summarise a Clinical Informative Missingness for Electronic Health Records with Ornstein-Uhlenbeck Pairwise Composite Likelihood (CIMEHR_timevarying_ou) Fit
summary.EHRJoint | Summarise a Joint Estimation for Electronic Health Record (EHR) Longitudinal Processes (EHRJoint) Fit
summary.Inverse_intensity_rate_ratio_balancing | Summarise an Inverse Intensity Rate Ratio (IIRR) Estimator with Balancing Weights Fit
summary.Inverse_intensity_rate_ratio_weighting | Summarise an Inverse Intensity Rate Ratio (IIRR) Weighting Estimator Fit
summary.Joint_modeling_visiting_and_longitudinal_Liang | Summarise a Joint Model for Visiting and Longitudinal (JMVL) Processes (Liang) Fit
summary.Linear_increment_IP_result | Summarise a Linear Increment (LI) Imputation with Informative Presence (IP) Adjustment Fit
summary.Linear_mixed_model_result | Summarise a Linear Mixed Model for Longitudinal Data Result
summary.Multiple_imputation_IP_result | Summarise a Multiple Imputation (MI) with Informative Presence (IP) Adjustment Fit
summary.Pairwise_likelihood | Summarise a Pairwise Composite Likelihood (PCL) Generalized Linear Model (Pairwise_likelihood) Fit
summary.Summary_stat_result | Summarise a Summary-Statistic Regression for Longitudinal Data Result
summary_observation | Summarise the Observation Process of a Fitted Method
summary_outcome | Summarise the Outcome Process of a Fitted Method
Summary_stat | Summary-Statistic Regression for Longitudinal Data
summary_visiting | Summarise the Visiting Process of a Fitted Method
vcov.CIMEHR | Variance-Covariance Matrix for Clinical Informative Missingness for Electronic Health Records (CIMEHR) Outcome Coefficients
vcov.CIMEHR_timevarying_ou | Variance-Covariance Matrix for Clinical Informative Missingness for Electronic Health Records (CIMEHR) Outcome Coefficients