# Data-Driven Search Strategy Development and Evidence Synthesis Reporting

## Documentation for package ‘CiteSource’ version 0.2.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

CiteSource-package | CiteSource: A package to compare sources of citation records
calculate_detailed_records | Calculate Detailed Record Counts
calculate_initial_records | Calculate Initial Records Unique Citations
calculate_phase_count | Calculate phase counts, precision, and recall
calculate_phase_records | Calculate Phase Counts with Precision and Recall
calculate_record_counts | Calculate record counts function Calculate and combine counts of distinct records, imported records, and unique records for each database
citation_summary_table | Contribution summary table
CiteSource | CiteSource: A package to compare sources of citation records
compare_sources | Compare duplicate citations across sources, labels, and strings
count_unique | Count number of unique and non-unique citations from different sources, labels, and strings
create_detailed_record_table | Create a Detailed Record Table
create_initial_record_table | Initial Record Table
create_precision_sensitivity_table | Count and Precision/Sensitivity Table
dedup_citations | Deduplicate citations
dedup_citations_add_manual | Add manually identified duplicate pairs to a deduplicated dataset
dedup_citations_add_sources | Add new citations to a previously deduplicated set and re-deduplicate
dedup_log | Build a provenance log of all merged duplicate pairs
detect_ | Detect file formatting information
detect_delimiter | Detect file formatting information
detect_lookup | Detect file formatting information
detect_parser | Detect file formatting information
detect_year | Detect file formatting information
export_bib | Export deduplicated citations to .bib file
export_csv | Export deduplicated citations with source data as CSV file
export_dedup_candidates | Export manual-review candidate pairs to a CSV file
export_ris | Export data frame to RIS file
merge_columns | Bind two or more data frames with different columns
parse_ | Parse bibliographic text in a variety of formats
parse_bibtex | Parse bibliographic text in a variety of formats
parse_csv | Parse bibliographic text in a variety of formats
parse_pubmed | Parse bibliographic text in a variety of formats
parse_ris | Parse bibliographic text in a variety of formats
parse_tsv | Parse bibliographic text in a variety of formats
plot_contributions | Create a bar chart that compares source contributions over stages
plot_source_overlap_heatmap | Create a heatmap matrix showing the overlap between sources
plot_source_overlap_upset | Create an UpSetR upset plot showing the overlap between sources
read_citations | Import citations from file
read_ref | Import bibliographic search results
record_counts | Record counts function Calculate and combine counts of distinct records and imported records for each database
record_level_table | Record-level table
reimport_csv | Reimport a CSV-file exported from CiteSource
reimport_dedup_candidates | Reimport manual-review candidate pairs exported from CiteSource
reimport_ris | Reimport a RIS-file exported from CiteSource
runShiny | A wrapper function to run Shiny Apps from 'CiteSource'.
run_shiny | A wrapper function to run Shiny Apps from 'CiteSource'.
synthesisr_read_refs | Import bibliographic search results
write_bib | Export data to a bibliographic format
write_refs | Export data to a bibliographic format
write_ris | Export data to a bibliographic format