605e1bde467e06b6edc3b2e7929df8f6 *DESCRIPTION
3614fbcd8c7ced2c87dfb578eb246553 *NAMESPACE
1fd92948826a97c49adffea5ee1e5953 *R/Af_PLM_dataframe.R
dae3f13a99ae6865ac87b1bcdf392f2b *R/Af_add_node_feature.R
26d8bbc52a519f091344c0974fd2c740 *R/Af_build.R
2a0967ae86d9cdc924381f27f86dc965 *R/Af_cluster_metrics.R
31c2fa7c6a33457a32b2f1aa64a8527b *R/Af_cluster_node_features.R
f5a27770accb42f5db23b64d91fc286a *R/Af_compare_PLM.R
353de3ecbbdc52b05d43fd9316501d53 *R/Af_compare_across_repertoires.R
bfbce09c78bef77df9cb7064b4779a70 *R/Af_compare_methods.R
4971e89da91c1c69c5732b48414bf53a *R/Af_compare_within_repertoires.R
c95f93d6f59dc4b5750414c41a655f26 *R/Af_distance_boxplot.R
546ce78eeaceec491a0ecb9122fdc205 *R/Af_distance_scatterplot.R
4f6ac08ad3ddf4c8c0015e728a968b28 *R/Af_edge_RMSD.R
28e2a782cf89f50e7e7f710a5a8da7ad *R/Af_get_sequences.R
2db53219cd952dda158071e06e9fa9ba *R/Af_metrics.R
4d5cb9c97ce1ca6844e2c2a198ae2840 *R/Af_node_size_boxplot.R
26348d2322a60aaaea62d72cc19f915b *R/Af_plot_PLM.R
b935c73c46e0b3f10bc33d97d2fef3ea *R/Af_plot_PLM_mut_vs_cons.R
22153b9f1944272be0ec8b56687c1d74 *R/Af_plot_tree.R
cb5105437b7d0e44222cd3e721638c8d *R/Af_sync_nodes.R
eca6751f75c4d8d600c05c467e95e999 *R/Af_to_newick.R
3d3ea53f6357d705c7fb18e69fbbc45e *R/AntibodyForests_data.R
1b17e80d3de417a5b0f1d4ea54bfd126 *R/VDJ_3d_properties.R
50c5e7708a685e1842bc0f20f43e6cbd *R/VDJ_import_IgBLAST_annotations.R
0f35778e2cf65d851106fe9296f4b5c9 *R/VDJ_integrate_bulk.R
a3e36b2c520c2ae050b792aa9332f3fb *R/VDJ_to_AIRR.R
bfdd87ff6361df41ce20f746adcd4fcf *R/calculate_GBLD.R
af43a1c727f241059764350ed8a235b4 *R/igraph_to_phylo.R
e909b957d81da0d61acc2eb2851416f5 *R/newick_to_Af.R
d89f3d71d679dd3f9aa580b55c3e713f *README.md
1168c75d808f8e522e505f734ffe218b *build/vignette.rds
17676157d607ea5ef731bd07247bbde1 *data/PLM_dataframe.rda
068df30db283239eba511101cb83aa50 *data/af_default.rda
3919762287b6908ab3a30bfb8b5d7ff4 *data/af_mst.rda
2daf8bdb40725365b543efac234d5359 *data/af_nj.rda
e7a5bab9c28d3727ca4b62137064dddc *data/compare_repertoire.rda
d3dadcfa6da563b8b9eaefcf1ea69d0e *data/small_af.rda
a0bdb1b72af013630cd702c8cd539847 *data/small_vdj.rda
ec3cd8c90b083ed09247db5d4837a4e0 *inst/doc/AntibodyForests_vignette.R
19f4ac9e28586aa2346f7758e0345d5a *inst/doc/AntibodyForests_vignette.Rmd
d307343eb37fbd32094988291eca6fdc *inst/doc/AntibodyForests_vignette.html
3b76f805055f544317ca0e091c0520e4 *man/Af_PLM_dataframe.Rd
3ac895568e4dfd01f91c3c94f255bc9b *man/Af_add_node_feature.Rd
c11620bb313787a2d715e9e6ad1dff6e *man/Af_build.Rd
1ba41315f89ff974e9767c6f9de198ca *man/Af_cluster_metrics.Rd
5ccb4f4241733da0ea01b1e4d7dc93d2 *man/Af_cluster_node_features.Rd
fa5642598f24aedf69a735ac3a8f7702 *man/Af_compare_PLM.Rd
6a25ebded837483e7daeec9f4168f4a9 *man/Af_compare_across_repertoires.Rd
9044a1ec7a429a56601ec21a3a6df86e *man/Af_compare_methods.Rd
eede388e7e3cddc24167bdabe8e321c0 *man/Af_compare_within_repertoires.Rd
76d7ea81e29a0f918bd0930a74f8cf54 *man/Af_distance_boxplot.Rd
51c68551dceb4ae5763788cf45ca5d06 *man/Af_distance_scatterplot.Rd
a6dc93bccb941d4549d68bf784453cfb *man/Af_edge_RMSD.Rd
331da4df6426d7b28663d255d8db8585 *man/Af_get_sequences.Rd
c78f6349b29f08acf93280028ce700b3 *man/Af_metrics.Rd
73d100407ab520729d1dfa41ed164f60 *man/Af_node_size_boxplot.Rd
72c8866d6f5165189ba8d6b04518e42b *man/Af_plot_PLM.Rd
57032946c22ef92aa02320572baae307 *man/Af_plot_PLM_mut_vs_cons.Rd
7927a33fe800e04311970105ee3d4982 *man/Af_plot_tree.Rd
c603b1b8e144eb407b4549af152e40ab *man/Af_sync_nodes.Rd
aab5ff92fec1530bf3012e5ff6e80551 *man/Af_to_newick.Rd
5ed649d53a5d9266aa0c80f5b3932783 *man/PLM_dataframe.Rd
a4a254e67640843b599f63a9d89426c3 *man/VDJ_3d_properties.Rd
60ffec5acd12299b2866373db9c7193e *man/VDJ_import_IgBLAST_annotations.Rd
53c62235dd26050fbcc1a0931539e1ea *man/VDJ_integrate_bulk.Rd
fcf2a50b75176559a29b66ff7c184a17 *man/VDJ_to_AIRR.Rd
8beb266a1365e46c436f64217137d681 *man/af_default.Rd
9f3b42c4d1f4d43c998b16fc0ad5aa7b *man/af_mst.Rd
8859c255d451fe27b946fbe872a290eb *man/af_nj.Rd
f1880cdeadeb24685b7b5b3ceaf4e8c1 *man/calculate_GBLD.Rd
8ed4997f30177cbb836208eadae55d7c *man/compare_repertoire.Rd
d5848b509ce4c73b3818b88b900ae353 *man/igraph_to_phylo.Rd
0dc0cc119b0e4437f98417ed4730b3f1 *man/newick_to_Af.Rd
9c1f4ffb7910a6aec6db0ca8fd04ccaf *man/small_af.Rd
de592a528c621a8a604f953f6254b566 *man/small_vdj.Rd
19f4ac9e28586aa2346f7758e0345d5a *vignettes/AntibodyForests_vignette.Rmd
ed24111468988128478a8e079fc45145 *vignettes/imgs/PLM1.png
4220c7d1b7aded877ea4bbc06f60a67e *vignettes/imgs/QuickStart/quick-start_PCA.png
c5aaa6bcd753f1f4b88cd0593a32be78 *vignettes/imgs/QuickStart/quick-start_PCA2.png
da4489502f838c54a0294aef912da130 *vignettes/imgs/QuickStart/quick-start_modalities.png
3ab6b1e8f0b71171200489c3425a1e10 *vignettes/imgs/QuickStart/quick-start_tree.png
7ea710525605f32bfa44876ddc17b522 *vignettes/imgs/boxplot_betweenness.png
c415dcdb3525ebfa5b95f83780ea0b2d *vignettes/imgs/boxplot_depth.png
ac32fbdc2394b0446b94abf2c8e738b3 *vignettes/imgs/bulk_tree.png
8a7deba135cf72ffd9ccc0702e58525f *vignettes/imgs/clusters_asymmetry.png
cea4466675e1f881e4e56122f9948112 *vignettes/imgs/clusters_isotype.png
ca3ca7e652612b42df8a49eca74bed1f *vignettes/imgs/clusters_modalities.png
6d34cc5bb66340cff5809a639810555b *vignettes/imgs/clusters_modalities2.png
8965f14a528134364fd5488e56401f9b *vignettes/imgs/clusters_sackin.png
f7eb9d1ed17f119a50155227c3b620b0 *vignettes/imgs/distance_boxplot.png
311cc6e86d951983d1a35c927c3c3b2f *vignettes/imgs/heatmap5.png
348271ff8fc1f816993852e46b6f63b9 *vignettes/imgs/heatmap_4.png
b75201bd3062bd6e0c1d9c5dc54228cd *vignettes/imgs/main/logo.png
faed9d3f3fb2ab5e670a0f4c957528b4 *vignettes/imgs/pca.png
9ed3a564ed3e5ae7cbe506752213ef74 *vignettes/imgs/plm_scatterplot.png
f4e25bff71ae8087f8c59192570d4eb3 *vignettes/imgs/structure_Ab_distance.png
eb8b8bf562e6a385ecab836a9f147365 *vignettes/imgs/tree_ova_ml_S1CL8.png
b3d8d2f8bb786f830dada1ea7366625a *vignettes/imgs/tree_ova_ml_S1CL8_internalnodes.png
5d4b0b5998941da2c2c81dd086f6774f *vignettes/objects/AntibodyForests_OVA_structure_AbAg.RData
bef00600323c628b09f7cf7d78acc06c *vignettes/objects/PLM_dataframe.RData
c8a5fecb15fd74c6c737022f15fa343b *vignettes/objects/VDJ_OVA_dummy_3.RData
527f2f742b7f2171f9976c11857f1916 *vignettes/objects/VDJ_ova_structure.RData
be5b45d200fda2bd73a0dc31680f68b2 *vignettes/objects/VDJ_structure_AbAg.RData
79118e253fde822dd3344a75b2203cd7 *vignettes/objects/metric_df.RData
