84d669e11461e0dc19b4bbf1593ebdcf *DESCRIPTION
048a9099535590d8f3c21c3f814f1a79 *NAMESPACE
9a192838a0266ce44e0f1bb5a021fc47 *R/JaccardSM.R
770c9fc7d7dc726156798bb59ade9a8b *R/MAN.R
4b218e418c56d95e0fbbf7968400671c *R/MINetworkPlot_topEdges.R
e617730d091f8929901d58745f37ab6d *R/MINetwork_matrix_topEdges.R
5138ecddae1e2db81c871a08f3dcf303 *R/MINetwork_simpliefied_topEdges.R
482163cbf4d0456384436fd43df49268 *R/PAC.R
381b2c0668b414ef4e56ed0ac5012563 *R/RcppExports.R
8c927f046292b1f51ce651f610ec8d01 *R/aggregateData.R
8a9a78bf2774f153ea26ea561758baab *R/annotateClades.R
6006813ea6f260979185a227a1cb343a *R/annotationMatrix_withSubpopProp.R
1acfe7393df1104dca179ed33d3a091d *R/constellationPlot.R
1fffe35d63d1c271a9bc98e326abff0a *R/fmeasure.R
c23b0b1b3866b70f1a4bd55576811583 *R/getAverageSpreadOf2SubpopClades.R
ac788db86773c45616fa0a8942f4511d *R/getExtraneousCladeSubpopulations.R
6a4b28b9f025a853ea97869a11a28c92 *R/getRepresentativeNetworks.R
8bec0ed374af98f8861f91446983749a *R/heatmapInput.R
a2f92a3e4549b9064a97bce525da06bd *R/outputNetworks_topEdges_matrix.R
eded64307e1bcd8581d300121bf5e73d *R/outputRepresentativeNetworks_topEdges.R
5ea1e9db0701b5489daf879b3916b329 *R/recordWithinClusterSpread.R
3e4337943a53a7b648782bb855bf11ab *R/refineSubpopulationLabels.R
d5b69714ee70ba69b71fac4c91eff6f5 *R/renamePrunedSubpopulations.R
bdb1fc19f2eee46cdca4894ffd070073 *R/runElbowPointAnalysis.R
c03058724ed82efee93532af9a7453f3 *R/samplePass.R
ef749b440f5bc0ccca05737c7fa518b7 *build/vignette.rds
f2ef2ef10f8d71a91cab189b61ff260a *inst/doc/intro.R
1d2073a267604c6c9f1b8fbe2a45915d *inst/doc/intro.Rmd
1c21d4111e432b0d4ead4651bcb72ad6 *inst/doc/intro.html
e1d84535089645ef826bb9c007f73413 *inst/doc/intro.md
7618efa3c88fbd6818873f9641342b15 *man/BSPLeaveCenter.Rd
7d5f87e282b513abbf1a6862d402488c *man/JaccardSM.Rd
a295fa92671cb06a978eacb0e587eadd *man/MAN.Rd
a269bb8977251052fa1f21c22eec3066 *man/MINetworkPlot_topEdges.Rd
6b1d55c291144a5ac91733fbe1edd72f *man/MINetwork_matrix_topEdges.Rd
a23cbecff02ac79cd324670b5652a1d9 *man/MINetwork_simplified_topEdges.Rd
d51513a023bf35f76f9c2d6a91f1708b *man/PAC.Rd
a381e65101c8c014557c6da0c516989e *man/aggregateData.Rd
c769ea875192544a78fc7966ecf8dacc *man/annotateClades.Rd
5e7eb94c99263a8a908df95b6059a0bd *man/annotationMatrix_withSubpopProp.Rd
78efa4c5ab2dffcb4daca768a756ed29 *man/constellationPlot.Rd
32ceade23a57877865ba44bb0f824067 *man/fmeasure.Rd
ba50721859e2d8c58ddf7eb5c60ffeb5 *man/getAverageSpreadOf2SubpopClades.Rd
0257061dd282fc26eba363b28ead27f4 *man/getExtraneousCladeSubpopulations.Rd
b2ad91ea1b2f802ff75003d0d4aa9d46 *man/getRepresentativeNetworks.Rd
3438bbc592477aa2e30ed6ed60797f17 *man/heatmapInput.Rd
a41e890d7a02b94433ea09d159be7978 *man/outputNetworks_topEdges_matrix.Rd
2999df8d755da55b361b452cce206630 *man/outputRepresentativeNetworks_topEdges.Rd
d415b3088967f19e277abbf03e1d2166 *man/recordWithinClusterSpread.Rd
2b747fb40bcf36b4c6004e4814913fe2 *man/refineSubpopulationLabels.Rd
b08ea596de7c55b838939fe1011e6235 *man/renamePrunedSubpopulations.Rd
506abcf9bd977ba1ea08eb1c6b1fe3f8 *man/runElbowPointAnalysis.Rd
42883152fa3e519f28283a2924a56268 *man/samplePass.Rd
c573118db7f544eefaee5b82c5e04f9a *src/Makevars
17d93528c647e38bb65fd6ca1df2b817 *src/RcppExports.cpp
aad1a3333f84a150ed93150e5e7e5772 *src/bsp.cc
3aa6d729a782a7195018a6234fe35c9d *src/bsp.h
3fa764885c3f99b04e0dae3f551cabd5 *src/bspconst.h
ca698b74cea7e40818040bab4f5074c1 *src/pac-wrapper.cc
98e767afca7f3c800cbb83744d8c9f41 *src/registerDynamicSymbol.c
5c12a4d7c1ececdc17e6f5d97dfab29e *src/type.h
53ab7cd275ac23355bd53c9b0b2e55ff *src/util.cc
daca98b8b2d72930444754e809ed858b *src/util.h
334c81c06d09efa691b96618ddd5674a *vignettes/BCR.Rdata
e632c599ed3401f6c583d125b9b6048a *vignettes/Basal.Rdata
3fed5fc94095d15415549c340567cbec *vignettes/IL7.Rdata
1d2073a267604c6c9f1b8fbe2a45915d *vignettes/intro.Rmd
e1d84535089645ef826bb9c007f73413 *vignettes/intro.md
5661d2670136b2e7f5503ef7095bd4b0 *vignettes/references.bib
