5233a2b706346d266475ae6300d4f65d *DESCRIPTION
cdceed09cb40d9d8c0dd3ea78d9360d6 *NAMESPACE
0c59838506f9bd25f3576bf8047cc090 *NEWS
db0989f492fe530eb9a17aa812303cdd *R/RcppExports.R
01692503a53be2e4d6a5562b6ce051c8 *R/fastphase.R
637d56c61ff281cbd14322e3f233f5d1 *R/knockoffs.R
ea12ea893a49cb1b27a1b7b1bfe6512d *R/knockoffs_snp.R
2e40846e2aa982b1613de51a17107b62 *R/models.R
4a073c73e13724b6ba7a5ecba502d7f9 *README.md
48b48104c91b78d8ea9953ce39dc539c *build/partial.rdb
adc567aa1345a81470c2dab8b9cae7f5 *build/vignette.rds
d44d737198c34b7c7e490e0fc49a9f56 *inst/CITATION
c29765e764baf92d53d36eb6a22b75e6 *inst/REFERENCES.bib
6cc000fe5ba39152554c4d4d2e173f3d *inst/auto/REFERENCES.el
f7aa1e10d6870f540f27c43d00b0a239 *inst/doc/SNPknock.R
454d4c908ad6e358bb9a86a2b35b42a1 *inst/doc/SNPknock.Rmd
2d2c0a826fd639a3a5a316428640fc11 *inst/doc/SNPknock.html
ee2b520253e4dd2c94cbfafadda01d60 *inst/doc/genotypes.R
0d376bd209134d098d352f35570a319b *inst/doc/genotypes.Rmd
70db8e41ccbe7874c38354cce9497a2b *inst/doc/genotypes.html
1c44da6e43bb2c7d725b054b24030f1f *inst/extdata/genotypes.RData
13b66183bb99d06b55356bebe189b9e1 *inst/extdata/genotypes.inp
249894d7aa068425633f065677d436c3 *inst/extdata/genotypes_alphahat.txt
d8a314cca7dbd4f62dd6cb1fd049356c *inst/extdata/genotypes_hmm.RData
dcb82bcc778dca7e3e24db68cec8a939 *inst/extdata/genotypes_origchars
797e30633ea86a6198bfbde7c52de900 *inst/extdata/genotypes_rhat.txt
ffeb656b22d4c8089450f6b7f5450877 *inst/extdata/genotypes_thetahat.txt
19144b3e4fc9dbe4574b88786f913176 *inst/extdata/haplotypes.RData
5f8d24dd89b872b3c875b71ea14b3688 *inst/extdata/haplotypes.inp
259015bfd4e6d79196e1205547fa9bcd *inst/extdata/haplotypes_alphahat.txt
1522bd1db378d87a328ead931dc39a83 *inst/extdata/haplotypes_hmm.RData
de367cf9e537d5e26fbfab0af0d06295 *inst/extdata/haplotypes_origchars
8305b5c426235f9977f78aa4f583b535 *inst/extdata/haplotypes_rhat.txt
88d20486926ad8f3b0c5b8024a68da12 *inst/extdata/haplotypes_thetahat.txt
6d2dc0bcd8c4437d5b4b7ac4b671bda2 *inst/extdata/hmm.RData
e9085e6f0c9f937484c49983d3a0f446 *man/GroupGenotypes_wrapper.Rd
f7167b92f1c4ece6139974a3a6c54299 *man/GroupHaplotypes_wrapper.Rd
503bf3a7adf4bdec234f4762989176b5 *man/assemble_Q.Rd
1a6413f885a0be88dea6096fa027246d *man/assemble_pEmit.Rd
89b6dbe7ce99dadb840ee12c7ee582ea *man/assemble_pEmit_phased.Rd
e44db92f5a107edb14028757e04b6ad3 *man/assemble_pInit.Rd
732ac3fdaa0f1d53e6048413ab693d8d *man/assemble_pInit_phased.Rd
e36e1480dfe681cc1af2ef4c37e41ad1 *man/compute_Q1.Rd
f779ada154d38f1a00257bd386025ab4 *man/knockoffDMC.Rd
117ff4ba403066cafd98fd154e12eabf *man/knockoffDMC_wrapper.Rd
80a0859f73790415cee6baf6f20bc7d2 *man/knockoffGenotypes.Rd
51d0edf5b808dc677ed954aa4d6e6170 *man/knockoffHMM.Rd
4164869dacf2b2690acda1f9adc955c0 *man/knockoffHMM_wrapper.Rd
de62f3c9031fb89739abcfd5888e40c1 *man/knockoffHaplotypes.Rd
2aef65ca41b1d502830fa7dd7b19449d *man/loadEMParameters.Rd
92ec9a0c5ad8122c33ca0befef6b288e *man/loadHMM.Rd
e4e260e7a8842e1aa89cfca394f9c982 *man/rand_weighted.Rd
6b3a73dc2b66b9188d50706f13a5c8dc *man/runFastPhase.Rd
08cf0db4522122a18c11a58866d63e0e *man/sampleDMC.Rd
ebb7e8c99a4cef996f0a306077dd6bf2 *man/sampleHMM.Rd
a7388e9ef4b9a37d1201da014d42c5f3 *man/writeXtoInp.Rd
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars
a1e86627020c43852446a8e2c2141b3f *src/Makevars.win
576d89d4b8c1e48866a9a59b9df05667 *src/RcppExports.cpp
4ef228a98c195336d517846900f44b96 *src/dmc.cpp
73ce894677ecfd28affa3aae4ad23d73 *src/dmc.h
c9d15d6498117fdf38102716efaa059c *src/genotypes.cpp
cd7d875f721dc3f068674ca3341c8053 *src/genotypes.h
99923e87a820c592e2476f3606902d61 *src/haplotypes.cpp
59330d0c62eb4a4456fb0542c1e72f46 *src/haplotypes.h
9af51ad27daeffa9c47bcb72249fa9ab *src/hmm.cpp
6ebf8113b814d4cc4d7d0393c809da82 *src/hmm.h
d5dac2450e70b6a909772ef69a3e4c2e *src/interface.cpp
c662fe43693dec83f0bdfd8c0b5def77 *src/interface.h
22460cb342e8503f5e85280b70833fca *src/utils.cpp
f0f331bec5df6ae4ca577c514096bc8d *src/utils.h
3ac7773a78ee46aa536c052c6f31bf82 *src/wrapper.cpp
620be378238bc8ec02541939e0280233 *tests/testthat.R
1cfb66354fe00f78d69ac6b793fbb38c *tests/testthat/helper_test.R
4d7eb5dd609288964d1c772fe36dd50e *tests/testthat/test_fastphase.R
d899a4991eb32d1412e63606393c3bf1 *tests/testthat/test_genetic.R
a150727e09161f1005b17894cfa92aba *tests/testthat/test_group.R
08396e6b1dc99cd57c34e0f4624c7a10 *tests/testthat/test_knockoffs.R
454d4c908ad6e358bb9a86a2b35b42a1 *vignettes/SNPknock.Rmd
64726eaf7088508ce92861b2e9026bd0 *vignettes/auto/bibliography.el
8d3ce0b1cb7263c2338daece4ff99ecd *vignettes/bibliography_old.bib
0d376bd209134d098d352f35570a319b *vignettes/genotypes.Rmd
