ac89a06423371b7c8a59b213cd8b4096 *DESCRIPTION
e6f7ef07164d31fdee45abed880c7cd6 *NAMESPACE
de244ccc964def04024ba72d329c9c3d *R/aaa.R
63b43b0ba876bb94ef50ec446ec8983c *R/blastSeq.R
5f8242ca6d93c400f0008f52002d77ec *R/coverageDensity.R
c4e0b9b2fc1209b121e2897983484c92 *R/createSpecies.R
2ad34557898a92e3591b93d4757cef0a *R/findSpecies.R
5c3df4dbe337880ef468a26c464894b7 *R/getAnnotation.R
418b8fe1b47634c06143240d4b643dd1 *R/getBlastResult.R
cddd5a6aef5ef9771d4280b42c61ac71 *R/getEnsgInfo.R
a955e11f161b5728dd0fc335bfc5bf6f *R/getFastaFromBed.R
7bc61a6ec9f5d8d35ef5fca17af6f05d *R/getGeneLocation.R
d5d1431faf294b81f51d6d77a79fc661 *R/getGeneSeq.R
12bb2e5a0df9af927f0a900c2c69b28f *R/getSequenceFromNCBI.R
064e993effd0ea145fd02ab9637b6c57 *R/helpFunctions.R
b57d8674069c38121156ee2acdc45fab *R/intersectXMLAnnot.R
d8c122123be8333326638742d58b2689 *R/plotCoverage.R
4495a8d1466a38f382e05d09af3c1d01 *R/plotHit.R
85f11ee8bac6bdb4f77448df55a4ff79 *R/print.blastRes.R
f65e1aa45376fc98e2596a70b8a32f81 *R/print.fa.R
f8deea43c62867acf7685a139cb2a942 *R/print.fq.R
158cb55bf6bdc213ef0d438c28b3c030 *R/sendFA.R
e60d160c8dbb35900e5c1a170edf4bca *R/subDose.R
a8d423aebe387aa1566d8827d38ca21d *R/subGProbs.R
331b6fc9e23e597eba6fc4df87f7ecd2 *R/subPhased.R
f7691e6fc9271b896ba375887dcd9518 *R/subPhased_uglyFix.R
89e74a988259e26a8e0288ebedc9c174 *R/summary.blastRes.R
1dc13923db2acce68765e182440840db *R/summary.fa.R
cf5a7bb49e935211fde75f148723c683 *R/summary.fq.R
9d75a334ba4f9f367281d52dd3702cd0 *R/tableSpecies.R
c01f749186ea936a2e690d3e23dca666 *R/targetScan.R
ccd530b0299c12896dbb5966a0a01bfa *R/xxx.R
354eb805abc2fa0ad796dc2d69c8e427 *README.md
aa9caca162331e462de621345c05fcd4 *build/vignette.rds
3bd242de8db959bbc49bfb63526c7f63 *data/species.rda
e9385d54fe6b461d6cfa3c561dc9800e *inst/ChangeLog
071f7822fb7e8e7a98c1100745a76d18 *inst/doc/hoardeR-vignette.R
000aa37f4faac2c82cd22c8553302a95 *inst/doc/hoardeR-vignette.Rmd
f7abde1131869217dea3d4cb1c97e596 *inst/doc/hoardeR-vignette.pdf
384bb8961093ac0c131ee5bdbb051280 *man/blastSeq.Rd
ff9aeae4d96b9bed596c1056063dd9e1 *man/coverageDensity.Rd
10abe151814215ad967822296881f1ab *man/findSpecies.Rd
321c50a6f8558ddb9f56fc719f87552e *man/getAnnotation.Rd
d9ee77f8e81e1741150c2f59515434d1 *man/getEnsgInfo.Rd
805f979c5264a7f8b5910fcc32f4a70b *man/getFastaFromBed.Rd
5d8a26bd1792a2905371f75c66f8f99c *man/getGeneLocation.Rd
9f463e4b61f401c15f1f76f6be580e2e *man/getGeneSeq.Rd
945081163762199257641afa8d3fc2f7 *man/getSequenceFromNCBI.Rd
81256c2dae3484f943d586f01639a7cd *man/hoardeR-package.Rd
47e35e308fe2bc39da633aa767632a68 *man/intersectXMLAnnot.Rd
f117a4a450527687f44c18a3e078a7a7 *man/plotCoverage.Rd
7b091bc9a48ea54690e8d290d93dadbf *man/plotHit.Rd
1327d71ac0185cd238e037411bc3e30f *man/print.fa.Rd
1fabe1bb168d50e6d92f114021beb45c *man/species.Rd
e89494e8d64af5084cfa1cda3c516789 *man/subDose.Rd
4b52cb91ed874e6fb5759aaae2aa074c *man/subGprobs.Rd
74f86baa303da94a064e8b774fba998b *man/subPhased.Rd
526b3064a7da7e3f6e34e4abc1f1af1f *man/summary.fa.Rd
acb64ff759ce793991182620bb123b93 *man/tableSpecies.Rd
e837d92bcc17036681be83c0b2cdf262 *man/targetScan.Rd
4b86f86ca5668e451449c5556e97af19 *vignettes/coverageExample.png
000aa37f4faac2c82cd22c8553302a95 *vignettes/hoardeR-vignette.Rmd
c12bd25a8130cfb16d57ba7e2e282b6f *vignettes/pigFlanking.png
