Last updated on 2026-05-04 20:51:08 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 210.27 | 1132.10 | 1342.37 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 184.87 | 848.95 | 1033.82 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 240.00 | 183.70 | 423.70 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 420.00 | 6567.59 | 6987.59 | ERROR | |
| r-devel-windows-x86_64 | 0.1.0 | 214.00 | 749.00 | 963.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 223.17 | 1184.70 | 1407.87 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 230.66 | 1194.20 | 1424.86 | OK | |
| r-release-macos-arm64 | 0.1.0 | 44.00 | 246.00 | 290.00 | OK | |
| r-release-macos-x86_64 | 0.1.0 | 139.00 | 1664.00 | 1803.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 218.00 | 730.00 | 948.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 124.00 | 565.00 | 689.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 263.00 | 832.00 | 1095.00 | OK |
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [0m/90m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(clustTMB)
>
> test_check("clustTMB")
Loading required package: mclust
Package 'mclust' version 6.1.2
Type 'citation("mclust")' for citing this R package in publications.
Loading required package: MoEClust
Package 'MoEClust' version 1.6.0.
Type '?MoEClust' to see a brief guide to how to use this R package.
Type 'citation("MoEClust")' for citing the package in publications.
Type 'MoE_news()' to see new features recent changes and bug fixes.
Loading required package: mvnfast
Loading required package: FMsmsnReg
Loading required package: TMB
using C++ compiler: 'clang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/clustTMB.Rcheck/tests/testthat'
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/tmp/Rtmpjy28ot/RLIBS_c47256707438c/RcppEigen/include" -DTMB_SAFEBOUNDS -DTMB_EIGEN_DISABLE_WARNINGS -DLIB_UNLOAD=R_unload_simple -DTMB_LIB_INIT=R_init_simple -DCPPAD_FRAMEWORK -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ref/simple.cpp -o ref/simple.o
In file included from ref/simple.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmpjy28ot/RLIBS_c47256707438c/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/Rtmpjy28ot/RLIBS_c47256707438c/RcppEigen/include/Eigen/SparseCore:61:
/tmp/Rtmpjy28ot/RLIBS_c47256707438c/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from ref/simple.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmpjy28ot/RLIBS_c47256707438c/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/Rtmpjy28ot/RLIBS_c47256707438c/RcppEigen/include/Eigen/SparseLU:35:
/tmp/Rtmpjy28ot/RLIBS_c47256707438c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/tmp/Rtmpjy28ot/RLIBS_c47256707438c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o ref/simple.so ref/simple.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/clustTMB.Rcheck/tests/testthat'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/clustTMB.Rcheck/tests/testthat'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/clustTMB.Rcheck/tests/testthat'
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘CovarianceStructure.Rmd’ using rmarkdown
--- finished re-building ‘CovarianceStructure.Rmd’
Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘SpatialExMeuseData.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
SUMMARY: processing the following file failed:
‘SpatialExMeuseData.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘CovarianceStructure.Rmd’ using rmarkdown
--- finished re-building ‘CovarianceStructure.Rmd’
--- re-building ‘SpatialExMeuseData.Rmd’ using rmarkdown
SUMMARY: processing the following file failed:
‘SpatialExMeuseData.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc