Last updated on 2026-05-05 03:50:03 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 6.1.0 | 16.69 | 192.24 | 208.93 | OK | |
| r-devel-linux-x86_64-debian-gcc | 6.1.0 | 13.37 | 142.91 | 156.28 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 6.1.0 | 32.00 | 342.47 | 374.47 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 6.1.0 | 33.00 | OK | |||
| r-devel-windows-x86_64 | 6.1.0 | 23.00 | 200.00 | 223.00 | OK | |
| r-patched-linux-x86_64 | 6.1.0 | 18.49 | 175.09 | 193.58 | OK | |
| r-release-linux-x86_64 | 6.1.0 | 17.18 | 175.27 | 192.45 | OK | |
| r-release-macos-arm64 | 6.1.0 | 5.00 | 53.00 | 58.00 | OK | |
| r-release-macos-x86_64 | 6.1.0 | 14.00 | 204.00 | 218.00 | OK | |
| r-release-windows-x86_64 | 6.1.0 | 25.00 | 198.00 | 223.00 | OK | |
| r-oldrel-macos-arm64 | 6.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 6.1.0 | 12.00 | 159.00 | 171.00 | OK | |
| r-oldrel-windows-x86_64 | 6.1.0 | 31.00 | 264.00 | 295.00 | OK |
Version: 6.1.0
Check: examples
Result: ERROR
Running examples in ‘hdnom-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: predict.hdnom.model
> ### Title: Make predictions from high-dimensional Cox models
> ### Aliases: predict.hdnom.model
>
> ### ** Examples
>
> data("smart")
> x <- as.matrix(smart[, -c(1, 2)])
> time <- smart$TEVENT
> event <- smart$EVENT
> y <- survival::Surv(time, event)
>
> fit <- fit_lasso(x, y, nfolds = 5, rule = "lambda.1se", seed = 11)
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Error in fit_lasso(x, y, nfolds = 5, rule = "lambda.1se", seed = 11) :
Null model produced by the full fit (all coefficients are zero). Please try to tune rule, seed, nfolds, or increase sample size.
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
compare_by_calibrate 4.747 0.125 5.757
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 6.1.0
Check: examples
Result: ERROR
Running examples in ‘hdnom-Ex.R’ failed
The error most likely occurred in:
> ### Name: predict.hdnom.model
> ### Title: Make predictions from high-dimensional Cox models
> ### Aliases: predict.hdnom.model
>
> ### ** Examples
>
> data("smart")
> x <- as.matrix(smart[, -c(1, 2)])
> time <- smart$TEVENT
> event <- smart$EVENT
> y <- survival::Surv(time, event)
>
> fit <- fit_lasso(x, y, nfolds = 5, rule = "lambda.1se", seed = 11)
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Error in fit_lasso(x, y, nfolds = 5, rule = "lambda.1se", seed = 11) :
Null model produced by the full fit (all coefficients are zero). Please try to tune rule, seed, nfolds, or increase sample size.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang