
This file addresses problems that were so far encountered when using the ScatterJ plugin




Installation of the plugin

To install the plugin, following the instructions for installing ImageJ plugins (http://rsbweb.nih.gov/ij/docs/guide/146-31.html#toc-Subsection-31.2). Under some Windows versions, this can be tricky if ImageJ is installed in a subfolder of C:\Program Files. In that case, it may be necessary to manually copy the ScatterJ_.class file into the plugins subfolder of the ImageJ directory.



Using extracted LIF-files

Data imported to ImageJ from LIF files (e.g. confocal laser scanning microscopy data) has to be saved in a common file format (e.g. TIF) and re-loaded before it can be evaluated using ScatterJ.